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View Code? Open in Web Editor NEWA nodejs library to consume biolink model
A nodejs library to consume biolink model
e.g. Add SYMBOL and UMLS as valid ID PREFIXES for Gene.
As explained in biothings/biothings_explorer#207, updating to Biolink 2.1.0 causes a TypeError and crashes the instance. This is caused by Entity expecting an array of strings and instead getting undefined for id_prefixes
when its name is ChemicalSubstance
, which is deprecated and defines no id_prefixes
.
This will make the data/biolink.yaml always the default source of biolink model data. And optionally, to use an alternative data file, we can use an ENV variable (e.g. BIOLINK_FILE
) to use a different file. The input biolink data file support support either JSON or YAML format.
data/
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