biostat0903 Goto Github PK
Name: Sheng Yang
Type: User
Company: University of Michigan, Nanjing Medical University
Location: Ann Arbor, Nanjing
Sheng Yang's Projects
1000-genomes-genetic-maps
Genetic maps interpolated to sites in the 1000 Genomes project
ad_oa_shared_genetic
annopred
Genetic risk prediction integrating LD and functional annotations
banns
Code and simulations using Biologically Annotated Neural Networks (BANNs)
bed-reader
A library for easy, fast, and efficient reading & writing of PLINK Bed files
biostat0903.github.io
(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more
cellphonedb
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
comm
Collaborative Mixed Model
dap
software package for integrative genetic association analysis
dbslmm
Deterministic Bayesian Sparse Linear Mixed Model
dbslmm-anaysis
Script and test data for compared method
de-analysis
dl-biobank
Can deep learning improve genomic prediction of complex human traits? by Pau Bellot, Gustavo de los Campos, Miguel Pérez-Enciso, Genetics
genomics-research
lassosum
LASSO for GWAS with summary statistics
ldpred
lightspeed
lightspeed matlab toolbox
modernwebprograming
Web programing
momf
nps
Non-Parametric Shrinkage (NPS)
pgs-depot
a comprehensive database for polygenic score
pgs-server
pgsfusion
PGS construction and epidemiological application
prsice
A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
rnaseq-data-analysis
Algorithms of the RNASeq data
sccatch_performance_comparison
The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database
scrna-seq-tcc-prep
Preprocessing of single-cell RNA-Seq data for input to kallisto
slurm-examples
somatic_mutations_gtex
Methods and analysis for Garcia-Nieto, et al. Somatic mutations
spatialpca
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