bioinformatics-lab Goto Github PK
Name: Bioinformatics Lab
Type: Organization
Bioinformatics Lab's Projects
africanum_analysis
aradeepopsis
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
assemblathon_stats_docker
Docker image for good-ol' assemblathon_stats.pl
bactopia
A flexible pipeline for complete analysis of bacterial genomes
biodragon
bioinfo_rio_vagrant
A vagrant version of the amazing ITGE2017 analysis machine
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
bov_human_nf
callings-nf
GATK RNA-Seq Variant Calling in Nextflow
chipimputation
Genotype Imputation Pipeline for H3Africa
chipimputation_evaluate_chips
clockwork
CRyPTIC data processing pipelines
conda_envs
containers
recipes of Singularity
covid19
Variant Analysis Pipeline for COVID19
dandrea_legionella_nf
download_genomes_from_ncbi
fastqwiper
A workflow to recover corrupted fastq.gz files, drop wrong lines and remove unpaired reads
gatk-nextflow
A Nextflow workflow to run GATK 4.1 modeled after the Broad's WDLs
gemmaker
A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
genotype_imputation_pipeline
Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 reference build, initial quality control, ancestry analysis, post-ancestry quality control, phasing, imputation, post-imputation quality control.
gentb-nf
The Nextflow version of https://github.com/farhat-lab/gentb-snakemake
gentb-site
The genTB project, the Django site, variant calling and prediciton pipeline, and mapping pipeline with hooks to two ravens
gwa_tutorial
A comprehensive tutorial about GWAS and PRS
gwas
A pipeline for Genome Wide Association Studies
gwas-nf
Nextflow pipeline to run genome wide association studies using limix
gwas_scripts
Codebook from my GWAS cookbook
h3abionet16s
H3ABioNet 16S rDNA diverstity analysis package
h3agwas
GWAS Pipeline for H3Africa
hhs
Hungry-Hungry SNPos
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