bioinfofungi / bioinfor

安装

if(!require(devtools)) { install.packages("devtools") }
library(devtools) 
install_github("BioinfoFungi/bioinfoR")

使用

library(BioinfoR)
initParam(authorization = "服务器配置",baseUrl = "默认为 http://localhost:8080/api")
showParam()
global <- globalConfig()

如果服务器请求需要授权，需要添加authorization参数，以确保正确获取数据 关于authorization的更多信息请看:https://github.com/BioinfoFungi/bioinfo_server

Survival analysis

fit <- tcgaSurvival("CHOL","TP53")
tcgaGGsurvplot(fit)

png(filename = "figure/TP53.png",width = 7,height = 7,res = 300,units = "in")
tcgaGGsurvplot(fit)
dev.off()

开发

• There are three main ways to run roxygen:
  • roxygen2::roxygenise().
  • devtools::document().
  • Ctrl + Shift + D, if you’re using RStudio.

参考

• https://github.com/r-lib/httr