how to extract the cn values to plot about panelcn.mops

[gpovysil]

Sorry for the late reply. The plots you show are not part of panelcn.mops and I'm not sure what you are looking for. The values in the cn.mops object you highlighted are posterior probabilities not RC ratios.
You could calculate a ratio by using columns of the resulttable (created with panelcn.mops function createResultTable): ratio = RC.norm/medRC.norm

[QuanLG]

the plot use the result of cns and cnr which are both output from cnvkit to show the copy number,so I want have a plot like this .
I try to use the result of panelcnv to estimate the longer segment by R package DNAcopy,I noticed that the DNAcopy use the logratio (aCGH, ROMA, etc.) or binary (LOH) and CBS to estimate the longer segment,so I want to extract the ration from the panelcnv .
Recently,I use 'logRatios <- cn.mops:::.makeLogRatios(res)' to extract the ration,but I find some logrations are greater than 1.5 ,but the CN type is CN0. so if I can use the logrations to estimate the longer segment?