bioinf-dev / wolf_et_al_cell_2019

UVB-induced tumor heterogeneity diminishes immune response in melanoma

Wolf_et_al_Cell_2019

UVB-induced tumor heterogeneity diminishes immune response in melanoma

Fig1 folder: Code and data for fig1 Survival plots.

Fig2 folder: Code and data for variant allele frequency density plots for clonal and subclonal mutations.

Fig3 folder: Code and data for variant allele frequency density plots for UVB time-point mutations.

Fig7 folder: Code and data for fig7 Survial plots based on Snyder, Riaz, Hugo, Van Allen et al., datasets.

Other folder: Contains RNAseq TPM data, and MS spectra for noeantigens.

wolf_et_al_cell_2019's Issues

Requesf for data share

Professor Wolf:
I'm very interested in your paper "UVB-Induced Tumor Heterogeneity Diminishes
Immune Response in Melanoma" and code which was such a good guide to the next research of our team. But when I tried to repeat your code of
"# Forest plot
ORs<read.table("yardena/Riaz_analysis/final_data/for_forest.txt",header=TRUE,sep='\t')" in the plot_K_M_curves.R of Figure7 , error was reported that "for_forest.txt" No such file or directory which means that you don't share this data on github. And I venture to ask for your share of this data. Thank you for your kindly help.