bio2bel / hsdn

Convert Himmerlstein's reproduction of the Human Symptom-Disease network to BEL

Bio2BEL HSDN

Converts the human symptoms-disease network produced by Zhou and Himmelstein to BEL

Big thanks to Daniel Himmelstein for preprocessing this data in his repository at: https://github.com/dhimmel/hsdn

Installation

bio2bel_hsdn can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_hsdn

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/hsdn.git

Setup

This repository does not currently cache the data, but only wraps conversion to BEL.

Python REPL

>>> import bio2bel_hsdn
>>> hsdn_manager = bio2bel_hsdn.Manager()
>>> graph = hsdn_manager.to_bel()