beaherrera / sef_error-pcs_theta_ern

Cortical Origin of Theta Error Signals

Cortical Origin of Theta Error Signals

Main analysis code for replicating biophysical simulations and figures in Herrera et al. (2023).

Processed data is available through OFS at https://osf.io/xs9nq/.

Description

• src_matlab: MatLab scripts for replicating analysis and figures.
• src_python: Python scripts for running biophysical simulations.

Main Dependencies

• MATLAB (release 2021b, The MathWorks).
• NEURON simulator (release 8.0, http://www.neuron.yale.edu/neuron)
• Python 3.8 (https://www.python.org/)
• LFPy 2.2.2 (https://github.com/LFPy/LFPy)
• CSDplotter (https://github.com/espenhgn/CSDplotter)
• FieldTrip (release fieldtrip-20221126)
• Brainstorm

License

Copyright (C) 2023- Beatriz Herrera, Amirsaman Sajad, Steven P. Errington, Jeffrey D. Schall, and Jorge J. Riera.

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

GNU GPLv3

Citation

Herrera, B., Sajad, A., Errington, S.P., Schall, J.D. and Riera, J.J., 2023. Cortical origin of theta error signals. Cerebral Cortex, 33(23), pp.11300-11319. DOI: https://doi.org/10.1093/cercor/bhad367

Acknowledgments

This work was supported by NIMH and NEI [grant numbers: R01MH55806, P30EY008126, and R01EY019882], FIU SEED Grant Wallace Coulter Foundation, and Canadian Institutes of Health Research Postdoctoral Fellowship. B. H. was supported by a fellowship from NIMH [F31 MH129101].