Comments (2)
cheny19
commented on May 30, 2024
Hi @lfaino,
I guess you are using the latest commit, instead of the latest released version? There're some bugs with this commit, and we are working on resolving them to make a new release.
Thanks,
Chen
from nanosim.
SaberHQ
commented on May 30, 2024
Dear @lfaino Were you able to make it run with the newest release?
https://github.com/bcgsc/NanoSim/releases
let us know if it works or not and we can close this issue then.
from nanosim.
Related Issues (20)
- Read analysis -- sam_read Parse error. HOT 2
- Project dependencies may have API risk issues
- Unexpected phred quality scores with perfect reads
- Could not retrieve index file for alignments HOT 2
- Abnormal error distribution in reads HOT 3
- Simulating exact number of reads for each input -- transcriptome mode HOT 2
- Reads come mostly from one chromosome only HOT 1
- hangs at start of simulation HOT 5
- Can NanoSim be applied to simulate single cell Nanopore reads HOT 1
- Invalid fastq format HOT 4
- mis.hist missing when running characterization stage
- file has no sequences defined (mode='r') - is it SAM/BAM format? Consider opening with check_sq=False HOT 1
- Nanosim hangs in the middle HOT 18
- Infinite loop in function extract_reads in metagenome mode when length equals max length HOT 2
- Transcriptome mode error rate tsv explanation HOT 2
- Models for R10.3 or R10.4 flow cell
- Option to specify desired read coverage or sequencing depth HOT 2
- ValueError: Found array with 0 sample(s) (shape=(0, 1)) while a minimum of 1 is required. HOT 6
- Please specify the training reads and its reference genome! HOT 3
- Stuck at simulation stage HOT 4
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