Related Issues (20)
- Long reads support for Sniffles files HOT 2
- Test using pyfaidx instead of Biopython for loading reference FASTA files HOT 4
- Offer support for conversion of gtf and gff files to MAVIS json format HOT 7
- Add local assembly support for breakpoint validation in Nanopore inputs HOT 1
- Modify DGV annotations to more general tab format to support complex SVs
- Optional parameters are required
- Straglr conversion support to json for MAVIS annotation HOT 5
- Summary module swaps LR to RL orientation HOT 1
- Convention Deletion Bug
- Integration information from fusion calls with transcriptomic data
- Add compression step to MAVIS snakemake v3
- Integrate CHM13-T2T support
- Add support for Arriba
- Docker Validation Error - tutorial full HOT 3
- Unused variables in validation module HOT 2
- snakemake.exceptions.WorkflowError: Config file is not valid JSON or YAML HOT 12
- ValidationError: Additional properties are not allowed ('summary.cluster_radius' was unexpected)
- error:('error: expected one of', {'duplication'}, 'but found', 'deletion' HOT 10
- Validate step not aligning reads that start with a chr to evidence that don't have a chr
- How to run mavis annotate directly? HOT 1
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