DLTree is a tool for phylogeny reconstruction.
DLTree stands for Dynamical Language Tree
which is the implementation
of an alignment-free algorithm to generate a dissimilarity matrix from
comparatively large collection of DNA or Amino Acid sequences,
preferably whole-genome data, for phylogenetic studies.
The latest DLTree 1.1 includes fixes for issues identified in 1.0 as well as other enhancements and changes. The notable changes compared to 1.0 include:
- 10000+ species are supproted.
- Cutting data redundancy by MD5 is supported. You can test it using the command ./md5.sh xx.fasta. It only contains bases or residues, ignoring comments and the line break.
Java 1.6+ and megacc 6+
1.configure conf/conf.properties 2.specify total available memory ./start.sh 3. chmod u+x ./start.sh mega/megacc 4.run ./start.sh 5.check result
Qi Wu, Zu-Guo Yu and Jianyi Yang. (2017) DLTree: a web server for phylogeny reconstruction using dynamical language, Bioinformatics 33(14): 2214โ2215, doi: 10.1093/bioinformatics/btx158.
This software is free for non-commercial use. For commercial use, a software agreement is required.
Welcome to send the email to [email protected], if you have any question about the DLTree.