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qiime2 and dada2. What is the difference between dada2 in qiime2 and dada2 as a standalone tool? about astrobiomike.github.io HOT 1 CLOSED

astrobiomike avatar astrobiomike commented on July 18, 2024
qiime2 and dada2. What is the difference between dada2 in qiime2 and dada2 as a standalone tool?

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Comments (1)

AstrobioMike avatar AstrobioMike commented on July 18, 2024

Hi there!

Yes if you’re using dada2 in qiime2, it’s still dada2 and creating ASVs :)

Only difference is there may be some minor functionality available in dada2 as a standalone that might not be configurable or accessible when using dada2 within qiime2. There’s just an inherent sacrifice of some things when we wrap other tools in a more convenient fashion and integrate them with other things like qiime2 does. That more than likely wouldn’t be an issue though, or anything you’d necessarily need or notice :)

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