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End-to-end analysis of spatial multi-omics data

Home Page: https://nichecompass.readthedocs.io/

License: BSD 3-Clause "New" or "Revised" License

Python 100.00%

nichecompass's Introduction

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NicheCompass (Niche Identification based on Cellular grapH Embeddings of COMmunication Programs Aligned across Spatial Samples) is a package for end-to-end analysis of spatial multi-omics data, including spatial atlas building, niche identification & characterization, cell-cell communication inference and spatial reference mapping. It is built on top of PyG and AnnData.

Resources

  • An installation guide, tutorials and API documentation is available in the documentation.
  • Please use issues to submit bug reports.
  • If you would like to contribute, check out the contributing guide.
  • If you find NicheCompass useful for your research, please consider citing the NicheCompass manuscript.

Reference

nichecompass's People

Contributors

sebastianbirk avatar arianamani avatar chelseabright96 avatar

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