Automate NIH search & aggregation
Home Page: https://trello.com/b/qrRkPAS7/tfg
License: GNU General Public License v3.0
Aggregation of NCBI searches.
Given a NCBI text query it gathers all related study IDs with the GSEs and SRPs.
Get installed poetry and then:
poetry install
uvicorn kilombo.main:appServer will listen in port 8000. You can check the functionality with this example query:
curl --location 'localhost:8000/query-study-hierarchy?keyword=stroke%20AND%20single%20cell%20rna%20seq%20AND%20musculus'
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