Comments (4)
- Does it run
- Does it install everything
- Do the installed programs work as expected
- Does installing with a custom prefix work
from urdo-smored.
Got to the prompt that asks where to install SMORE'D hit enter to choose the default directory and got the below issue. Still testing.
from urdo-smored.
So the version of dd
on scicomp is from 2010, we need a version from at least 2012. Reach out to Shatavia and see if we can get scicomp to update coreutils
.
Will also look at whether the pre-flight script can be used to satisfy this dependency
from urdo-smored.
I've implemented a slightly customized installer that should now work on scicomp (and anywhere with a dd
from this century).
I've tested the new installer at CDC, and the initial install appears to be working correctly. @annagaines, I'd appreciate if you could run some datasets on scicomp through smored (the command should be aliased already as smored
in your shell)
from urdo-smored.
Related Issues (14)
- Test on full dataset
- User testing ALPHA.1 issues
- Release of SMORED beta to CDC
- Don't need config argument
- Provide larger test set HOT 1
- Expand CI tests HOT 3
- Warn users if bad profiles file is given HOT 1
- smored classification missing results for 'S1_1' samples HOT 2
- Instantiate ABiL pip server HOT 1
- Decide on representative test set
- Database sequences with lowercase bases were not added as uppercase
- Resistance kmers HOT 2
- SMORE'D crashing with too many threads HOT 5
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from urdo-smored.