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Fix size check in AbstractDs#checkSize

Fix size check in AbstractDs#checkSize so that we always detect whether a
buffer is too small for a read or write operation to take place.

Offsets and bounding boxes probably need to be taken into account.

Original issue reported on code.google.com by [email protected] on 15 Feb 2008 at 8:30

IllegalStateException in HDF wrapper

java.lang.RuntimeException: java.util.concurrent.ExecutionException:
java.lang.IllegalStateException
    at net.lunglet.sre2008.TrainGMMSVM.train(TrainGMMSVM.java:143)
    at net.lunglet.sre2008.TrainGMMSVM.main(TrainGMMSVM.java:69)
Caused by: java.util.concurrent.ExecutionException:
java.lang.IllegalStateException
    at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:222)
    at java.util.concurrent.FutureTask.get(FutureTask.java:83)
    at net.lunglet.sre2008.TrainGMMSVM.train(TrainGMMSVM.java:139)
    ... 1 more
Caused by: java.lang.IllegalStateException
    at net.lunglet.hdf.NativeIdComponent.getId(NativeIdComponent.java:68)
    at net.lunglet.hdf.NativeIdComponent.close(NativeIdComponent.java:60)
    at net.lunglet.hdf.NativeIdComponent.cleanup(NativeIdComponent.java:32)
    at net.lunglet.hdf.IdComponent.<init>(IdComponent.java:12)
    at net.lunglet.hdf.H5File.<init>(H5File.java:83)
    at net.lunglet.hdf.H5File.<init>(H5File.java:79)
    at net.lunglet.hdf.H5File.<init>(H5File.java:75)
    at net.lunglet.hdf.H5File.<init>(H5File.java:89)
    at net.lunglet.sre2008.TrainGMMSVM$2.call(TrainGMMSVM.java:114)
    at net.lunglet.sre2008.TrainGMMSVM$2.call(TrainGMMSVM.java:1)
    at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
    at java.util.concurrent.FutureTask.run(FutureTask.java:138)
    at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:8
85)
    at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:907)
    at java.lang.Thread.run(Thread.java:619)

Original issue reported on code.google.com by [email protected] on 22 Apr 2008 at 7:31

Remove log4j in favor of JDK logging

Remove log4j dependency and use JDK logging instead, following the lead of
the GlassFish project.

http://wiki.glassfish.java.net/Wiki.jsp?page=FaqConfigureLogging

Original issue reported on code.google.com by [email protected] on 15 Feb 2008 at 8:27

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