anu-bioinfo Goto Github PK

omicsintegrator2

Convenient Prize-Collecting Steiner Forests for Interactomes

oncoppis

onion

Network based integration of transcriptomics and metabolomics data

onionnet

A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction

open_pipelines

Pipelines for NGS data preprocessing by the Bock lab and friends

openbot

OpenBot leverages smartphones as brains for low-cost robots. We have designed a small electric vehicle that costs about $50 and serves as a robot body. Our software stack for Android smartphones supports advanced robotics workloads such as person following and real-time autonomous navigation.

opendrop

Open Source Digital Microfluidics Bio Lab

openmicroscopy

Non-comprehensive list of projects and resources related to open microscopy.

orfquant

An R package for Splice-aware quantification of translation using Ribo-seq data

osint-tools

:eyes: Some of my favorite OSINT tools.

osp

An Open-source Plate Reader

paccmann

PaccMann training models

paccmann_rl

Pipeline to reproduce PaccMann^RL results

pan-cancer-gems

pancanatlas_code_public

Public repository containing research code for the TCGA PanCanAtlas Splicing project

pancanmet_analysis

Software and analysis of metabolism studies across multiple cancer types

panmyeloid

papers-literature-ml-dl-rl-ai

Highly cited and useful papers related to machine learning, deep learning, AI, game theory, reinforcement learning

patchbiota

pathway-connectivity

Hypergraph-based connectivity measures for signaling pathway topologies

pathway_mapping

Python modules, scripts, and examples for integrative pathway mapping

pcawg-11

Code accompanying "The evolutionary history of 2,658 cancers", bioRxiv

pcreode

An algorithm for mapping cell state transitions.

peitho

Experimental Design for Systems Biology

pga_and_c-edge

Code for the paper: "Discovering code Essential Multiple Gene Effects through Large Scale Optimization: an Application to Human Cancer Metabolism"

phylom

Tumor Phylogeny Topology Inference via Deep Learning

physics-based-deep-learning

Links to works on deep learning algorithms for physics problems, TUM-I15 and beyond

pipecomp

A R framework for pipeline benchmarking, with application to single-cell RNAseq

pipgcn

Protein Interface Prediction using Graph Convolutional Networks

plateeffects2016

Code and manuscript files for Aaron's plate effect paper.