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tcr-pairing-preferences

TCR chain pairing preferences: interactions and restriction of alpha and beta chain sequences in T-cell receptors

tcr-pmhc-model

Scripts for modelling TCR:pMHC structures

tcr-pmhc-study

Mining TCR:pMHC structural data

tcr-survival-model

T-cell sampling and survival model for HSCT and similar T-cell repertoire dynamics studies

tcr-thymic-selection

Network properties of public TCRs

tcren-ms

📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential

tcrpmhc

Annotated TCRpMHC structures from PDB

til-tcr-analysis

[DEPRECATED]

trab-pairing-study

📝 [Paper] Studying pairing preferences between TCR alpha and beta chains

vdjdb-align

TCR sequence alignment optimization & benchmark

vdjdb-classifier-benchmark

vdjdb-db

🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

vdjdb-motifs

⚙️ Motif inference for the VDJdb database

vdjdb-server

[MOVED/DEPRECATED] See vdjdb-web repository for latest version

vdjdb-structure

🗂️ Template-based modelling of TCR:pMHC structures for VDJdb database

vdjdb-structure-tmp

Visualization of known and modeled structures from VDJdb using contact maps

vdjdb-web

Interactive browser for the VDJdb database

vdjmatch

⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

vdjsight

[under development] Next-generation immunome browser

vdjstruct

[DEPRECATED]

vdjtrack

📝 Detecting T-cell expansion and quantifying clone survival from deep profiling of immune repertoires

vdjviz

⚙️ A lightweight immune repertoire browser