antigenomics Goto Github PK
Name: AntigenOmics
Type: Organization
Bio: Mining antigen and antigen receptor repertoires. Immune repertoire biomarker databases and software tools.
Twitter: antigenomics
Location: Russian Federation
Name: AntigenOmics
Type: Organization
Bio: Mining antigen and antigen receptor repertoires. Immune repertoire biomarker databases and software tools.
Twitter: antigenomics
Location: Russian Federation
TCR chain pairing preferences: interactions and restriction of alpha and beta chain sequences in T-cell receptors
Scripts for modelling TCR:pMHC structures
Mining TCR:pMHC structural data
T-cell sampling and survival model for HSCT and similar T-cell repertoire dynamics studies
Network properties of public TCRs
📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
Annotated TCRpMHC structures from PDB
[DEPRECATED]
📝 [Paper] Studying pairing preferences between TCR alpha and beta chains
TCR sequence alignment optimization & benchmark
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
⚙️ Motif inference for the VDJdb database
[MOVED/DEPRECATED] See vdjdb-web repository for latest version
🗂️ Template-based modelling of TCR:pMHC structures for VDJdb database
Visualization of known and modeled structures from VDJdb using contact maps
Interactive browser for the VDJdb database
⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
[under development] Next-generation immunome browser
[DEPRECATED]
📝 Detecting T-cell expansion and quantifying clone survival from deep profiling of immune repertoires
⚙️ A lightweight immune repertoire browser
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