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Representation Learning for detection of phenotype-associated cell subsets

Home Page: http://www.imsb.ethz.ch/research/claassen/Software/cellcnn.html

License: MIT License

Python 100.00%

cellcnn's Introduction

CellCnn

Installation

  1. Clone the CellCnn repository
git clone https://github.com/eiriniar/CellCnn.git
  1. Install the CellCnn dependencies
pip install -r https://raw.githubusercontent.com/eiriniar/CellCnn/master/requirements.txt
  1. To install CellCnn, run the following command after replacing path_to_CellCnn with the actual path in your system
pip install -e path_to_CellCnn/CellCnn

Usage

Examples are provided in the subfolder CellCnn/cellCnn/examples. More detailed documentation will follow soon.

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