aniewielska / cpa-bioexcel-cwl

Cloud Portal Application for bioexcel cwl execution

Cloud Portal Application - bioexcel-cwl

Cloud Portal Bioexcel application to create VM with tools such as CWL, toil, docker and nfs client. It uses the ubuntu 18.04 image from openstack and installs tools: cwl, toil, docker using ansible.

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Requirements

Instructions

Add project to cloud portal, enter suitable inputs and deploy.

Default values

Deployment parameters

Parameter name	Parameter value
disk_image_name	ubuntu-18.04
remote_user	ubuntu
machine_type	s1.small
local_folder	nfs-imports
floating_ip_pool	ext-net
network_name	``
ssh_key	``
public_key_path	~/.ssh/id_rsa.pub
private_key_path	~/.ssh/id_rsa
user_private_key_path	~/.ssh/id_rsa
name	CWL Instance
nfs_install	yes or no
workflow_url	https://github.com/

Inputs

Parameter name	Parameter value
nfs_server_host	IP
remote_folder	/var/nfs

Open Ports

The virtual machine provided will have this ports open.

ICMP: all
TCP : 22

Ansible roles

Ansible Galaxy: indigo-dc.nfs https://galaxy.ansible.com/indigo-dc/nfs/