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svd - matrix singularity about angsd HOT 2 CLOSED

aalbrechtsen avatar aalbrechtsen commented on June 28, 2024
svd - matrix singularity

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ANGSD avatar ANGSD commented on June 28, 2024

Would setting keepssites to zero be fine?

On 15 Jul 2016, at 09:52, Anders Albrechtsen [email protected] wrote:

ANGSD -doAsso 2

does not allow for covariate matrix of non full rank for ANY sites. It should instead give NA for these sites


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aalbrechtsen avatar aalbrechtsen commented on June 28, 2024

it now returns -999 for sites with low rank
this solved issue X

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