Comments (1)
I also receive errors when trying to run estAvgError.R. These error messages differ whether I run the following command on a computing cluster or locally:
Rscript DSTAT angsdFile="bam.ABBABABA" out="result" sizeFile=”sizeFile.size” nameFile=”popNames.name”
When I try to run the following command on the computing cluster, I get:
-bash: /data100/software/ANGSD/v0.929/bin/angsd/R/: Not a directory
When I try to run the same command locally on my laptop, I get the following error:
(base) xx@ff ABBABABA % Rscript DSTAT angsdFile="bam.ABBABABA" out="result" sizeFile=”sizeFile.size” nameFile=”popNames.name”
angsdFile: bam.ABBABABA errFile: FALSE nameFile: ”popNames.name” sizeFile: ”sizeFile.size” out: result addErr: FALSE nIter: 100 maxErr: 0.02
Fehler in file(file, "rt") : kann Verbindung nicht öffnen
Ruft auf: unlist -> read.table -> file
Ausführung angehalten
Any ideas?
Thank you in advance,
Christine
from angsd.
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