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CUDA code for DE+PSO for Gene Regulatory Network inference

Python 5.88% Cuda 94.12%
bioinformatics cuda differential-evolution grn memetic-algorithms pso-algorithm python3

cuda-memetic-algorithm's Introduction

CUDA Accelerated Memetic Algorithm

Requeriments

Ubuntu 16.04 Cuda compilation tools, release 7.5, V7.5.17

Compile

nvcc --default-stream per-thread -lcurand -o test RRG.cu

Profiler analysis

nvprof —f -o analysis.nvprof ./test Instancias/Tominaga2SSGeneratedData.txt Salidas/salida.txt

Check gpu proccess

watch -n 0.5 nvidia-smi

Memcheck

cuda-memcheck --leak-check full --racecheck-report all ./test Instancias/Tominaga2SSGeneratedData.txt Salidas/salida2.txt

References

Notes

CUDA C Programing Guide

CUDA By Example Code

cuda-memetic-algorithm's People

Contributors

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Watchers

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