amouhsine / ggfortify

Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.

ggfortify

Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.

Note: For functions which returns list, ggfortify tries to infer a background class using its attribute names. Such functions are marked as "(inference)".

Installation

• Install the latest stable release from CRAN:

  install.packages('ggfortify')
  

• Install the development version from Github:

  library(devtools)
  install_github('sinhrks/ggfortify')
  

Reference/Citation

If you use this package, please cite our paper to appear in R Journal soon.

Yuan Tang, Masaaki Horikoshi, and Wenxuan Li. ggfortify: Unified Interface to Visualize Statistical Result of Popular R Packages. The R Journal, 2016.

Coverage

This covers following classes:

• base::matrix
• base::table (supports fortify only)
• cluster::clara
• cluster::fanny
• cluster::pam
• changepoint::cpt
• dlm::dlmFilter
• dlm::dlmSmooth (inference)
• fGarch::fGARCH
• forecast::bats
• forecast::forecast
• forecast::ets
• forecast::nnetar
• fracdiff::fracdiff
• glmnet::cv.glmnet
• glmnet::glmnet
• KFAS::KFS
• KFAS::signal (inference)
• lfda::lfda
• lfda::klfda
• lfda::self
• maps::map
• MASS::isoMDS (inference)
• MASS::sammon (inference)
• raster::RasterBrick
• raster::RasterCommon
• raster::RasterLayer
• raster::RasterStack
• sp::Line
• sp::Lines
• sp::Polygon
• sp::Polygons
• sp::SpatialLines
• sp::SpatialLinesDataFrame
• sp::SpatialPoints
• sp::SpatialPointsDataFrame
• sp::SpatialPolygons
• sp::SpatialPolygonsDataFrame
• splines::basis
• stats::acf
• stats::ar
• stats::Arima
• stats::cmdscale (inference)
• stats::decomposed.ts
• stats::density
• stats::factanal
• stats::glm
• stats::HoltWinters
• stats::kmeans
• stats::lm
• stats::prcomp
• stats::princomp
• stats::spec
• stats::stepfun
• stats::stl
• stats::ts
• survival::survfit
• survival::survfit.cox
• strucchange::breakpoints
• strucchange::breakpointsfull
• timeSeries::timeSeries
• tseries::irts
• vars::varprd
• xts::xts
• zoo::zooreg

Helper Functions

• ggdistribution to plot PDF/CDF
• ggcpgram to plot cpgram
• gglagplot to plot lag.plot
• ggtsdiag to plot tsdiag
• ggfreqplot to generalize monthplot

Examples

• Concepts and Basics of ggfortify
• Plotting Diagnostics for LM and GLM with ggplot2 and ggfortify
• Plotting Time Series with ggplot2 and ggfortify
• Plotting PCA, clustering, LFDA and MDS
• Plotting Survival Curves using ggplot2 and ggfortify
• Plotting Probability Distributions with ggplot2 and ggfortify
• One Line of Code to ggplot2 Popular R Packages (Chinese)

ggplot2 Families

There are some useful plotting packages using ggplot2. ggfortify will not focus on area already covered by these packages.

• GGally
• ggdendro
• ggRandomForests
• ggmcmc