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Computational model of laboratory directed evolution + experiments.

Dockerfile 0.74% Makefile 0.76% Shell 3.40% Python 55.64% C++ 36.71% R 1.70% TeX 1.06%
digital-evolution evolutionary-computation directed-evolution artificial-selection parent-selection-algorithms

directed-digital-evolution's Introduction

Directed digital evolution

supplemental DOI OSF DockerHub link GitHub stars

Click the supplemental material badge (in pink) at the top of this readme to navigate to the supplemental material ebook.

Repository guide:

  • bib/ contains BibTex files with references used in the supplemental material.
  • docs/ contains documentation
  • experiments/ contains the configuration files, HPC submission scripts, and analyses for all preliminary and final (published) experiments
  • include/ contains the C++ header files that implement the model of directed evolution
  • tests/ contains tests for directed digital evolution library functions

Credits

This package was created with Cookiecutter and the devosoft/cookiecutter-empirical-project project template.

This package uses Empirical, a library of tools for scientific software development, with emphasis on also being able to build web interfaces using Emscripten.

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