Installing the packages with the environment YML about mi-eeg-1d-cnn

[ambitious-octopus]

Thank you for reporting this issue!
Try replacing the contents of the environment.yml file with this:

name: eeg
channels:
  - conda-forge
  - defaults
dependencies:
  - appdirs=1.4.4=pyh9f0ad1d_0
  - apptools=5.1.0=pyh44b312d_0
  - argon2-cffi=20.1.0=py38h294d835_2
  - async_generator=1.10=py_0
  - attrs=20.3.0=pyhd3deb0d_0
  - backcall=0.2.0=pyh9f0ad1d_0
  - backports=1.0=py_2
  - backports.functools_lru_cache=1.6.1=py_0
  - bleach=3.3.0=pyh44b312d_0
  - blosc=1.21.0=h0e60522_0
  - brotli=1.0.9=h0e60522_4
  - brotlipy=0.7.0=py38h294d835_1001
  - bzip2=1.0.8=h8ffe710_4
  - ca-certificates=2020.12.5=h5b45459_0
  - cached-property=1.5.1=py_0
  - certifi=2020.12.5=py38haa244fe_1
  - cffi=1.14.5=py38hd8c33c5_0
  - cftime=1.4.1=py38h347fdf6_0
  - chardet=4.0.0=py38haa244fe_1
  - charls=2.2.0=h39d44d4_0
  - cloudpickle=1.6.0=py_0
  - colorama=0.4.4=pyh9f0ad1d_0
  - configobj=5.0.6=py_0
  - cryptography=3.4.4=py38hb7941b4_0
  - curl=7.71.1=h4b64cdc_8
  - cvxpy=1.1.10=py38haa244fe_0
  - cvxpy-base=1.1.10=py38h4c96930_0
  - cycler=0.10.0=py_2
  - cytoolz=0.11.0=py38h294d835_3
  - dask-core=2021.2.0=pyhd8ed1ab_0
  - decorator=4.4.2=py_0
  - defusedxml=0.6.0=py_0
  - dipy=1.3.0=py38hbc2243c_1
  - double-conversion=3.1.5=h6538335_2
  - ecos=2.0.7.post1=py38h347fdf6_4
  - eigen=3.3.9=h2d74725_1
  - entrypoints=0.3=pyhd8ed1ab_1003
  - envisage=4.9.2=pyh9f0ad1d_1
  - expat=2.2.10=h39d44d4_0
  - ffmpeg=4.3.1=ha925a31_0
  - freetype=2.10.4=h546665d_1
  - giflib=5.2.1=h8d14728_2
  - gl2ps=1.4.2=h0597ee9_0
  - glew=2.1.0=h39d44d4_2
  - hdf4=4.2.13=h0e5069d_1004
  - hdf5=1.10.6=nompi_h5268f04_1114
  - icu=68.1=h0e60522_0
  - idna=2.10=pyh9f0ad1d_0
  - imagecodecs=2021.1.28=py38hb9201fa_0
  - imageio=2.9.0=py_0
  - imageio-ffmpeg=0.4.3=pyhd8ed1ab_0
  - importlib-metadata=3.7.0=py38haa244fe_0
  - importlib_metadata=3.7.0=hd8ed1ab_0
  - intel-openmp=2020.3=h57928b3_311
  - ipykernel=5.5.0=py38hc5df569_1
  - ipython=7.20.0=py38hc5df569_2
  - ipython_genutils=0.2.0=py_1
  - ipywidgets=7.6.3=pyhd3deb0d_0
  - jedi=0.18.0=py38haa244fe_2
  - joblib=1.0.1=pyhd8ed1ab_0
  - jpeg=9d=h8ffe710_0
  - jsoncpp=1.9.4=h2d74725_1
  - jsonschema=3.2.0=py_2
  - jupyter=1.0.0=py38haa244fe_6
  - jupyter_client=6.1.11=pyhd8ed1ab_1
  - jupyter_console=6.2.0=py_0
  - jupyter_core=4.7.1=py38haa244fe_0
  - jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
  - jupyterlab_widgets=1.0.0=pyhd8ed1ab_1
  - jxrlib=1.1=h8ffe710_2
  - kiwisolver=1.3.1=py38hbd9d945_1
  - krb5=1.17.2=hbae68bd_0
  - lcms2=2.12=h2a16943_0
  - lerc=2.2.1=h0e60522_0
  - libaec=1.0.4=h39d44d4_1
  - libblas=3.9.0=8_mkl
  - libcblas=3.9.0=8_mkl
  - libclang=11.0.1=default_h5c34c98_1
  - libcurl=7.71.1=h4b64cdc_8
  - libdeflate=1.7=h8ffe710_5
  - libflang=5.0.0=h6538335_20180525
  - libiconv=1.16=he774522_0
  - liblapack=3.9.0=8_mkl
  - libnetcdf=4.7.4=nompi_h3a9aa94_107
  - libogg=1.3.4=h8ffe710_1
  - libpng=1.6.37=h1d00b33_2
  - libsodium=1.0.18=h8d14728_1
  - libssh2=1.9.0=hb06d900_5
  - libtheora=1.1.1=h62dcd97_1004
  - libtiff=4.2.0=hc10be44_0
  - libwebp-base=1.2.0=h8ffe710_0
  - libxml2=2.9.10=hf5bbc77_3
  - libzopfli=1.0.3=h0e60522_0
  - llvm-meta=5.0.0=0
  - llvmlite=0.35.0=py38h57a6900_1
  - loguru=0.5.3=py38h32f6830_2
  - lz4-c=1.9.3=h8ffe710_0
  - m2w64-gcc-libgfortran=5.3.0=6
  - m2w64-gcc-libs=5.3.0=7
  - m2w64-gcc-libs-core=5.3.0=7
  - m2w64-gmp=6.1.0=2
  - m2w64-libwinpthread-git=5.0.0.4634.697f757=2
  - matplotlib=3.3.4=py38haa244fe_0
  - matplotlib-base=3.3.4=py38h34ddff4_0
  - mayavi=4.7.2=py38h8d3ad35_4
  - meshio=4.3.8=pyhd8ed1ab_0
  - mffpy=0.6.2=pyhd8ed1ab_0
  - mistune=0.8.4=py38h294d835_1003
  - mkl=2020.4=hb70f87d_311
  - mne=0.22.0=pyhd8ed1ab_2
  - mock=4.0.3=py38haa244fe_1
  - msys2-conda-epoch=20160418=1
  - nbclient=0.5.2=pyhd8ed1ab_0
  - nbconvert=6.0.7=py38haa244fe_3
  - nbformat=5.1.2=pyhd8ed1ab_1
  - nest-asyncio=1.4.3=pyhd8ed1ab_0
  - netcdf4=1.5.6=nompi_py38h5338a22_100
  - networkx=2.5=py_0
  - nibabel=3.2.1=pyhd8ed1ab_0
  - nilearn=0.7.0=pyhd8ed1ab_0
  - notebook=6.2.0=py38haa244fe_0
  - numba=0.52.0=py38h4c96930_0
  - numexpr=2.7.2=py38h4c96930_0
  - olefile=0.46=pyh9f0ad1d_1
  - openjpeg=2.4.0=h48faf41_0
  - openmp=5.0.0=vc14_1
  - openssl=1.1.1j=h8ffe710_0
  - osqp=0.6.2=py38h4c96930_1
  - packaging=20.9=pyh44b312d_0
  - pandas=1.2.2=py38h4c96930_0
  - pandoc=2.11.4=h8ffe710_0
  - pandocfilters=1.4.2=py_1
  - parso=0.8.1=pyhd8ed1ab_0
  - patsy=0.5.1=py_0
  - pickleshare=0.7.5=py_1003
  - pillow=8.1.0=py38h9273828_2
  - pip=21.0.1=pyhd8ed1ab_0
  - pooch=1.3.0=pyhd8ed1ab_0
  - proj=7.2.0=h1cfcee9_2
  - prometheus_client=0.9.0=pyhd3deb0d_0
  - prompt-toolkit=3.0.16=pyha770c72_0
  - prompt_toolkit=3.0.16=hd8ed1ab_0
  - psutil=5.8.0=py38h294d835_1
  - pugixml=1.11.4=h0e60522_0
  - pycparser=2.20=pyh9f0ad1d_2
  - pydicom=2.1.2=pyhd3deb0d_0
  - pyface=7.1.0=pyh9f0ad1d_0
  - pygments=2.8.0=pyhd8ed1ab_0
  - pyopenssl=20.0.1=pyhd8ed1ab_0
  - pyparsing=2.4.7=pyh9f0ad1d_0
  - pyqt=5.12.3=py38haa244fe_7
  - pyqt-impl=5.12.3=py38h885f38d_7
  - pyqt5-sip=4.19.18=py38h885f38d_7
  - pyqtchart=5.12=py38h885f38d_7
  - pyqtwebengine=5.12.1=py38h885f38d_7
  - pyreadline=2.1=py38haa244fe_1003
  - pyrsistent=0.17.3=py38h294d835_2
  - pysocks=1.7.1=py38haa244fe_3
  - pysurfer=0.11.0=py_0
  - pytables=3.6.1=py38h153c448_3
  - python=3.8.8=h7840368_0_cpython
  - python-dateutil=2.8.1=py_0
  - python-picard=0.4=pyh5ca1d4c_1
  - python_abi=3.8=1_cp38
  - pytz=2021.1=pyhd8ed1ab_0
  - pyvista=0.28.1=pyhd8ed1ab_1
  - pyvistaqt=0.3.0=pyhd8ed1ab_0
  - pywavelets=1.1.1=py38h347fdf6_3
  - pywin32=300=py38h294d835_0
  - pywinpty=0.5.7=py38h32f6830_1
  - pyyaml=5.4.1=py38h294d835_0
  - pyzmq=22.0.3=py38h7a0e47e_0
  - qdldl-python=0.1.5=py38h4c96930_0
  - qt=5.12.9=h5909a2a_4
  - qtconsole=5.0.2=pyhd8ed1ab_0
  - qtpy=1.9.0=py_0
  - requests=2.25.1=pyhd3deb0d_0
  - scikit-image=0.18.1=py38h4c96930_0
  - scikit-learn=0.24.1=py38ha09990b_0
  - scooby=0.5.6=pyh9f0ad1d_0
  - scs=2.1.2=py38h7465cd0_2
  - send2trash=1.5.0=py_0
  - setuptools=49.6.0=py38haa244fe_3
  - six=1.15.0=pyh9f0ad1d_0
  - snappy=1.1.8=ha925a31_3
  - spyder-kernels=1.10.2=py38haa244fe_0
  - sqlite=3.34.0=h8ffe710_0
  - statsmodels=0.12.2=py38h347fdf6_0
  - tbb=2020.2=h2d74725_3
  - tbb-devel=2020.2=h2d74725_3
  - terminado=0.9.2=py38haa244fe_0
  - testpath=0.4.4=py_0
  - threadpoolctl=2.1.0=pyh5ca1d4c_0
  - tifffile=2021.2.1=pyhd8ed1ab_0
  - tk=8.6.10=h8ffe710_1
  - toolz=0.11.1=py_0
  - tornado=6.1=py38h294d835_1
  - tqdm=4.57.0=pyhd8ed1ab_0
  - traitlets=5.0.5=py_0
  - traits=6.2.0=py38h294d835_0
  - traitsui=7.1.0=pyh9f0ad1d_0
  - transforms3d=0.3.1=py_0
  - urllib3=1.26.3=pyhd8ed1ab_0
  - utfcpp=3.1.2=0
  - vc=14.2=hb210afc_3
  - vs2015_runtime=14.28.29325=h5e1d092_3
  - vtk=9.0.1=no_osmesa_py38h3499093_104
  - wcwidth=0.2.5=pyh9f0ad1d_2
  - webencodings=0.5.1=py_1
  - wheel=0.36.2=pyhd3deb0d_0
  - widgetsnbextension=3.5.1=py38haa244fe_4
  - win32_setctime=1.0.3=py_0
  - win_inet_pton=1.1.0=py38haa244fe_2
  - wincertstore=0.2=py38haa244fe_1006
  - winpty=0.4.3=4
  - xlrd=2.0.1=pyhd8ed1ab_3
  - xz=5.2.5=h62dcd97_1
  - yaml=0.2.5=he774522_0
  - zeromq=4.3.3=h0e60522_3
  - zfp=0.5.5=h0e60522_4
  - zipp=3.4.0=py_0
  - zlib=1.2.11=h62dcd97_1010
  - zstd=1.4.8=h4e2f164_1
  - pip:
    - absl-py==0.11.0
    - aggdraw==1.3.12
    - aniso8601==9.0.1
    - astunparse==1.6.3
    - bidict==0.21.2
    - bioread==2.1.2
    - biosppy==0.6.1
    - cachetools==4.2.1
    - click==8.0.1
    - cvxopt==1.2.6
    - docopt==0.6.2
    - fasttext==0.9.2
    - flask==2.0.1
    - flask-restful==0.3.9
    - future==0.18.2
    - gast==0.3.3
    - google-auth==1.27.0
    - google-auth-oauthlib==0.4.2
    - google-pasta==0.2.0
    - grpcio==1.35.0
    - h5py==2.10.0
    - imbalanced-learn==0.8.0
    - itsdangerous==2.0.1
    - jinja2==3.0.1
    - keras-preprocessing==1.1.2
    - keyboard==0.13.5
    - markdown==3.3.4
    - markupsafe==2.0.1
    - mouseinfo==0.1.3
    - neurokit==0.2.0
    - nltk==3.6.2
    - nolds==0.5.2
    - numpy==1.18.5
    - oauthlib==3.1.0
    - opt-einsum==3.3.0
    - protobuf==3.15.2
    - pyasn1==0.4.8
    - pyasn1-modules==0.2.8
    - pyautogui==0.9.52
    - pybind11==2.6.2
    - pydot==1.4.2
    - pygetwindow==0.0.9
    - pymsgbox==1.0.9
    - pynput==1.7.3
    - pyperclip==1.8.2
    - pyrect==0.1.4
    - pyscreeze==0.1.27
    - python-graphviz==0.16
    - pytweening==1.0.3
    - regex==2021.7.6
    - requests-oauthlib==1.3.0
    - rsa==4.7.2
    - scipy==1.4.1
    - seaborn==0.11.1
    - shortuuid==1.0.1
    - sklearn==0.0
    - tensorboard==2.4.1
    - tensorboard-plugin-wit==1.8.0
    - tensorflow==2.3.0
    - tensorflow-estimator==2.3.0
    - termcolor==1.1.0
    - visualkeras==0.0.2
    - werkzeug==2.0.1
    - wget==3.2
    - wrapt==1.12.1

In case this does not solve the problem please write to me ([email protected]), I will be happy to help you.

[lopezjuanma96]

Cool! Thanks for such a fast response, I'll try it out today and contact you in any case

[lopezjuanma96]

Hello Fran! I believe I managed to run a training correctly. I had to erase some lines from the environment.yml that you send me, they were

changed python-graphviz to graphviz
deleted libwebp-base (couldn't find any variant

but i still believe those packages were not that important for the training itself but rather for graphs, logs and prints (please tell me if that's not the case and how we can work it out. I'll take a break for the weekend but I'll come back to it on monday and review any changes you suggest and then start comparing it to our data and model. I'll comment you on the results as soon as I get it.

Thanks for your help man!