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seqstats's Introduction

seqstats

Print basic stats from sequence files.

Usage

usage: seqstats [-h] [-f {fasta,clustal,embl,genbank,imgt,phd,pir,tab}] [-v] seqfile [seqfile ...]

Installation

This is a Python script, so, you can just run the uniqseq.py file or put a symbolic link in any directory of your PATH (e.g. /usr/local/bin). The second option is recommend.

Dependencies

  • Python3
  • Biopython
  • argparse
  • statistics

OSs

It runs in Linux, probably in Mac OS too, but not tested.

Examples

seqstats seq.fasta

seqstats seq1.pir seq2.pir -f pir

seqstats's People

Contributors

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Watchers

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Forkers

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