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covasim_apps's Introduction

Covasim applications

Applications of Covasim that do not have their own repository.

covasim_apps's People

Contributors

cliffckerr avatar

Stargazers

avatar Bernard Antwi Adabankah avatar avatar Mariia Sosnovskaya avatar

Watchers

Romesh Abeysuriya avatar James Cloos avatar William Chen avatar Scott Ayers avatar avatar avatar avatar Daniel Klein avatar Andre Lin avatar avatar

Forkers

jaoeya

covasim_apps's Issues

auto_calibration.py fails with newer versions of Covasim

auto_calibration.py uses compute_likelihood. Should be updated to use covasim.Fit instead.

Error produced:

Covasim 1.4.7 (2020-06-02) — © 2020 by IDM
Done.
Note: Covasim is newer than expected (1.4.7 vs. 1.4.0)
Running initial...
Traceback (most recent call last):
  File "auto_calibration.py", line 178, in <module>
    objective(pars.best)
  File "auto_calibration.py", line 80, in objective
    mismatch1 = -sim.compute_likelihood(weights=weights) # Built in mismatch
AttributeError: 'Sim' object has no attribute 'compute_likelihood'

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