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moltbe's Issues

More than one possible alignment

The module at its current state returns only one of the possible alignments. It should be modified in order to return all of them.

Alignment is changing the sequences

When a gap is added to seq1, the element at the same position in seq2 is lost and replaced by the previous element. This does not happen the other way round (see ex. below).

Ex.
-------[ test_align ]-------
Seqs to align:

  1. ACGUCGT
  2. ATCGTCGT
    Results:
    Score of the alignment: 11
    Alignment number 1:
    A_CGUCGT
    AACGTCGT
    .__.**

-------[ test_align ]-------
Seqs to align:

  1. ATCGTCGT
  2. ACGUCGT
    Results:
    Score of the alignment: 11
    Alignment number 1:
    ATCGTCGT
    A_CGUCGT
    .__.**

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