Allen Institute for Neural Dynamics's Projects
Widget that will create inputs for properties in a class
inverted spim system control
Java library for reading OME-Zarr data sets.
Place for scientists & engineers on ophys-mFish projects (Learning mFISH, omFISH) to put ophys data processing development code, especially as a place to ease transition from LIMS to Codeocean
Dev site for testing analysis pipelines and qc for learning mFISH project. Anything related to 2p data (plus behavior and spatial transcriptomics)
a migration of the lick detector hardware from Janelia
Software examples for Thorlabs products: Spectrometers CCSxxx | Polarimeter PAX1000 | Power Meter PMxxx | Optical Spectrum Analyzers OSA | Shack-Hartmann Wavefront Sensors WFSxx | CMOS Camera Beam Profiler BC207
testing compression for lightsheet data
Mesoscale activity ephys ingest schema
BOM generator for the Modular Insertion System (MIS)
pass-through connection panels for the Modular Insertion System (MIS)
usb serial to 6x camera focus ring utility
python library for the mis-focus-controller
Probe Storage Box for the Modular Insertion System (MIS)
A flexible, scalable extracellular electrophysiology rig
NWB extension to add AIND metadata
WebGL-based viewer for volumetric data
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Code Ocean capsule to export ephys units data to NWB
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
A registry of publicly available datasets on AWS
Python interface to Optotune focus-tunable lenses
A minimal python driver for communicating with a Oxxius Laser.