alexander-mead / hmcode

Augmented halo model for accurate non-linear matter power spectrum calculations

HMcode

You may also be interested in this version of pyHMcode, which provides a python wrapper around the Fortran of HMcode. Alternatively, the repository HMcode-python contains a version of HMcode-2020 written in pure Python. Otherwise, pyhalomodel provides a pure-Python implementation of the vanilla halo-model calculation in such a form that it can be applied to any tracer combination.

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The code in this repository produces the HMcode non-linear matter power spectrum using the augmented halo-model approach described in Mead (2021). It can also produce HMcode results from Mead et al. (2016) or from Mead et al. (2015). Appendix B of the 2015 paper details the numerical methods used in the calculation. If you use this work, or this code, I would be very grateful if you were to cite the relevant papers. For the enthusiast, the code itself can also be cited: http://ascl.net/1508.001.

Clone the repository using

git clone --recursive https://github.com/alexander-mead/HMcode

the --recursive is important because that will also ensure that necessary libraries are cloned in to the library/ subdirectory. HMcode can then be compiled using make. If you get an error:

*** No rule to make target `build/precision.o', needed by `bin/HMcode'.

this is because you did not use the --recursive flag. HMcode should compile with any Fortran compiler, the default is gfortran, but you can change the compiler within the Makefile if necessary. To run the compiled code type ./bin/HMcode.

Six cosmological parameters can be specified via the command line in the order: Om_m; Om_b; h; ns; sig8; w. If these are not specified then they take on default values: Om_m = 0.30; Om_b = 0.05; h = 0.70; ns = 0.96; sig8 = 0.80; w = -1.0. The cosmological model is taken to be flat wCDM, with constant w and flatness is enforced via the dark-energy density. These restrictions can be relaxed if necessary, and more complicated dark-energy models can be investigated, but adding this would require a small bit of hacking and thought. Please contact me if you are interested in this and have any trouble implementing it yourself.

In addition, a CAMB-format linear power spectrum (two columns: $k$ and $P(k)$ with units $h\mathrm{Mpc}^{-1}$ and $(h^{-1}\mathrm{Mpc})^3$ respectively, with a single leading # comment line) can be provided as a seventh command-line argument. This linear spectrum is taken to be at $z=0$ and its amplitude at higher redshifts is calculated assuming a scale-independet growth factor that is calculated via the cosmological parameters. If a linear spectrum is specified in this way then it is assumed to be normalised correctly and the value of sig8 provided via the command line will be ignored.

To give a concrete example:

./bin/HMcode 0.32 0.049 0.67 0.97 0.81 -1.0 input/Planck_linearpower.dat

would return the non-linear power for a cosmology with Om_m = 0.32; Om_b = 0.049; h = 0.67; ns = 0.97; sig8 = 0.81; w = -1.0 with a linear spectrum taken from input/Planck_linearpower.dat.

Initally the code fills up arrays for the wavenumbers, $k$, and scale-factors, $a$, for which the power spectrum is required. The code then calls the subroutine assign_cosmology, which sets the cosmological parameters - if you wish to make additional changes to the cosmological parameters in the source file then this needs to be done after assign_cosmology has been called, but before init_cosmology is called. The code calls the calculate_HMcode routine to do the halo-model calculation and finally writes results using the write_power_a routine. The data file is written to data/power.dat: the first line starts with ### and then lists the scale factors. The first column is the wavenumbers and subsquent columns are values of the power spectrum at the corresponding $k$ and $a$ values. These can be checked against the included data/power_example.dat for agreement.

There are different options for the version: either HMcode2015, HMcode2016, HMcode2020, or HMcode2020_feedback. By default the linear power is calculated from the approximate Eistenstein & Hu (1998) fitting function, which is accurate at only around the 5% level, with particular inaccuracy around the BAO scale. If this accuracy is not sufficient for your needs then you should use either the version of HMcode that is included within CAMB, that within CLASS, or else specify a linear spectrum via the command line as described above.

Using HMcode within CAMB or CLASS is also the only way to get results for massive-neutrino cosmologies, because I could not find a suitably accurate fitting function for the linear matter power spectrum in the presence of massive neutrinos. If you know of one, and if this would be useful for your work, then please let me know.

HMcode2016 is compatabile with DGP and $f(R)$ modified gravity cosmologies as detailed in the 2016 paper. These can be activated by setting the cosm%img flag and then setting relevant modified-gravity parameters in the code. Look in cosmology_functions.f90 to see examples of how to do this and please contact me if you have any trouble.

In testing I was able to get the power at 16 $a$ and 128 $k$ points in 0.15 seconds for a regular LCDM cosmology using gfortran on a 2018 Macbook with -O3 optimisation.

The gnuplot script power.p in the plot/ directory can be used to plot the output. It can be run using gnuplot > load 'plot/power.p.

Please let me know if you need any help running the code. Or if you have any questions whatsoever.

The development of HMcode between 2017 and 2020 was assisted by the Horizon 2020 research and innovation programme of the European Union under Marie Sklodowska-Curie grant agreement No. 702971.

Alexander Mead

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UPDATES

2023/01/10: Fix for HMcode-2020 feedback erroneously predicting effects at very large scales ($k\simeq10^{-4}h\mathrm{Mpc}^{-1}$).

2021/01/14: Support for cosmological parameters and an external linear spectrum to be provided via the command line.

2020/09/22: Added library as a git submodule so that they do not need to be cloned separately. Also support for HMcode2020_feedback was added some time between this update and that documented below.

2020/07/03: Complete rewrite of code. Lots of options listed below are now suppressed. Support for HMcode2020, HMcode2016 and HMcode2015 versions. Enabled support for modified gravity models for the HMcode2016 version. New dependence on my library: https://github.com/alexander-mead/library. The old repository has been archived and can be found at https://github.com/alexander-mead/HMcode-old.

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OLD STUFF

2018/02/14: Added support for a standard two-halo term. This can be activated by setting ihm=3 in the code. Now ihm=1 is the accurate calculation whereas ihm=2 is the standard calculation but with a linear theory two-halo term. The variable imead has been removed. There is a new logical verbose. Also added option ihm=0 to do linear theory only.

2018/01/18: Added support for an input linear spectrum from CAMB. This can be input via the command line as described above.

2016/08/02: Small update to the README and some very minor fixes in the code to facilitate direct comparisons with other halomodel power codes.

2016/02/04: Included updates from Mead et al. (2016) including parameterising the two-halo damping term in terms of f(sigma_v) and slightly recalibrated values of alpha and f_damp. Now works for w(a)CDM models, where *w(a)=w_0+(1.-a)w_a.

2016/01/23: Updated the code a little so that it no longer calculates a range in nu and simply converts a mass range into a nu range to do the integral. The mass range is fixed from haloes of 1e2 to 1e18 Solar masses, it is difficult to imagine an application of this code where this halo mass range would not be sufficient. This further helps when considering strange cosmological models at high redshift that suffer from a lack of haloes, for these models doing a nu to M inversion occasionally reached incredibly tiny halo masses that contribute negligbly to the power spectrum on cosmological scales due to their tiny sizes.

2015/07/07: One user reported crashes that occured for quite extreme cosmological models (n_s < 0.5, sig8 < 0.3, z>5). I have fixed this rather crudely by adding IF statements that catch problems (which manifest themsevles as extreme parameter values). The physical reason for these problems is that models with these odd cosmological parameters have R_nl << 1 Mpc and so have very few haloes. Some of the routines I was using previously had assumed that R_nl would not be so tiny.

hmcode's Issues

Compatibility of HMCODE with gcc compiler

I was trying to run the latest HMCODE 2020, but I am getting the following error:

suhani@suhani-Vostro-5490:~/HMcode$ ./bin/HMcode 0.32 0.049 0.67 0.97 0.81 -1.0 input/Planck_linearpower.dat

 ASSIGN_COSMOLOGY: Assigning cosmological model parameters
 ASSIGN_COSMOLOGY: Cosmology: Boring
 ASSIGN_COSMOLOGY: Done

At line 201 of file library/src/basic_operations.f90
Fortran runtime error: End of file

Error termination. Backtrace:
#0  0x7fb09d28bd26 in list_formatted_read_scalar
at /home/rdonnelly/mc/conda-bld/compilers_linux-64_1534627447954/work/.build/x86_64-conda_cos6-linux-gnu/src/gcc/libgfortran/io/list_read.c:2308
#1  0x55ece56793ab in ???
#2  0x55ece5767db1 in ???
#3  0x55ece56784dc in ???
#4  0x7fb09ce28082 in ???
#5  0x55ece567853d in ???
#6  0xffffffffffffffff in ???

I tried to even check different versions of HMCODE for compatibility. I am getting same error message for all trials.
To download from github, I used: git clone --recursive https://github.com/alexander-mead/HMcode, and then make..this all executed successfully.

add topics

I suggest adding the topics astrophysics, cosmology in the About section.