afm-spm / afm-software-list Goto Github PK

View Code? Open in Web Editor NEW

2.0 2.0 2.0 87 KB

Management of our curated AFM software list

Home Page: https://afm-spm.github.io/afm-software-list/

License: MIT License

Python 100.00%

afm-software-list's People

Stargazers

Watchers

Forkers

nr-forde hasihays

afm-software-list's Issues

Please add this software: Trace_y

Please replace null in the following template with quoted values (e.g. "Name": "TopoStats",). Do so only where applicable (e.g. not every software has a Homepage).

{
  "Name": "Trace_y",
  "Description": "Tracing filament polymers and individual filament 3D structural analysis algorithms.",
  "Authors": "Wei-Feng Xue",
  "Repository": "http://github.com/wfxue/Trace_y",
  "Homepage": "http://github.com/wfxue/Trace_y",
  "Documentation": "https://github.com/wfxue/Trace_y/blob/main/README.md",
  "Download Page": "http://github.com/wfxue/Trace_y",
  "Coding Language": "Matlab",
  "License": "MIT",
  "Operating System": ["Windows", "macOS"],
  "Pricing Model": null
}

Please add this software: SmarTrace

Please replace null in the following template with quoted values (e.g. "Name": "TopoStats",). Do so only where applicable (e.g. not every software has a Homepage).

{
  "Name": SmarTrace,
  "Description": Chain tracing program developed to extract persistence lengths from AFM images of filaments such as collagen and DNA. Can be used on any type of image with bright chain-like structures on a darker background.,
  "Authors": Naghmeh Rezaei, Nancy Forde,
  "Repository": github,
  "Homepage": null,
  "Documentation": [readme](https://github.com/FordeLab/SmarTrace/blob/main/README.md),
  "Download Page": [github: SmarTrace](https://github.com/FordeLab/SmarTrace),
  "Coding Language": MatLab,
  "License": null,
  "Operating System": null,
  "Pricing Model": null
}

Please add this software: AutoSmarTrace

Please replace null in the following template with quoted values (e.g. "Name": "TopoStats",). Do so only where applicable (e.g. not every software has a Homepage).

{
  "Name": AutoSmarTrace,
  "Description": For automated tracing of chains in AFM images or any bright chain-like objects on dark background with or without noise.,
  "Authors": Mathew Schneider, Naghmeh Rezaei, Nancy Forde,
  "Repository": github,
  "Homepage": null,
  "Documentation": [readme](https://github.com/FordeLab/AutoSmarTrace/blob/main/README.txt),
  "Download Page": [github: AutoSmarTrace](https://github.com/FordeLab/AutoSmarTrace),
  "Coding Language": MatLab,
  "License": null,
  "Operating System": null,
  "Pricing Model": null
}

Update TopoStats details

Update TopoStats entry...

{
  "Authors": "TopoStats Developers",
  "Coding Language": "Python",
  "Description": "An AFM image analysis program to batch process data and obtain statistics from images.",
  "Documentation": "https://afm-spm.github.io/TopoStats/",
  "Download Page": [
    "https://pypi.org/project/topostats/",
    "https://github.com/AFM-SPM/TopoStats/releases/"
  ],
  "Homepage": "https://afm-spm.github.io/TopoStats/",
  "License": "LGPL",
  "Name": "TopoStats",
  "Operating System": [
    "Linux",
    "Windows",
    "macOS"
  ],
  "Pricing Model": "FOSS",
  "Repository": "https://github.com/AFM-SPM/TopoStats"
}

Add icons for coding languages

...to reduce width of software list.

Add "Cite" column

So people know how to cite the software.

Please add this software: NAME

Please replace null in the following template with quoted values (e.g. "Name": "TopoStats",). Do so only where applicable (e.g. not every software has a Homepage).

{
  "Name": null,
  "Description": null,
  "Authors": null,
  "Repository": null,
  "Homepage": null,
  "Documentation": null,
  "Download Page": null,
  "Coding Language": null,
  "License": null,
  "Operating System": null,
  "Pricing Model": null
}

Please add this software: Trace_y

Please replace null in the following template with quoted values (e.g. "Name": "TopoStats",). Do so only where applicable (e.g. not every software has a Homepage).

{
  "Name": Trace_y,
  "Description": Tracing filament polymers and individual filament 3D structural analysis algorithms.
  "Authors": Wei-Feng Xue,
  "Repository": github,
  "Homepage": http://github.com/wfxue/Trace_y,
  "Documentation": https://github.com/wfxue/Trace_y/blob/main/README.md,
  "Download Page": http://github.com/wfxue/Trace_y,
  "Coding Language": Matlab,
  "License": MIT,
  "Operating System": MacOS, Windows
  "Pricing Model": null
}

Please add this software: Multiple software packages

There are a number of software packages listed in the TopoStats page which are not currently listed here. These should be added, skeletons below...

gwyfile

{
  "Name": "gwyfile",
  "Description": null,
  "Authors": null,
  "Repository": null,
  "Homepage": null,
  "Documentation": null,
  "Download Page": null,
  "Coding Language": null,
  "License": null,
  "Operating System": null,
  "Pricing Model": null
}

magni

{
  "Name": "magni",
  "Description": null,
  "Authors": null,
  "Repository": null,
  "Homepage": null,
  "Documentation": null,
  "Download Page": null,
  "Coding Language": null,
  "License": null,
  "Operating System": null,
  "Pricing Model": null
}

libasd

{
  "Name": "libasd",
  "Description": null,
  "Authors": null,
  "Repository": null,
  "Homepage": null,
  "Documentation": null,
  "Download Page": null,
  "Coding Language": null,
  "License": null,
  "Operating System": null,
  "Pricing Model": null
}

nanoforce

{
  "Name": "nanoforce",
  "Description": null,
  "Authors": null,
  "Repository": null,
  "Homepage": null,
  "Documentation": null,
  "Download Page": null,
  "Coding Language": null,
  "License": null,
  "Operating System": null,
  "Pricing Model": null
}

nanoscope

{
  "Name": "nanoscope",
  "Description": null,
  "Authors": null,
  "Repository": null,
  "Homepage": null,
  "Documentation": null,
  "Download Page": null,
  "Coding Language": null,
  "License": null,
  "Operating System": null,
  "Pricing Model": null
}

NSFOpen

{
  "Name": "NSFOpen",
  "Description": null,
  "Authors": null,
  "Repository": null,
  "Homepage": null,
  "Documentation": null,
  "Download Page": null,
  "Coding Language": null,
  "License": null,
  "Operating System": null,
  "Pricing Model": null
}

pycroscopy

{
  "Name": "pycroscopy",
  "Description": null,
  "Authors": null,
  "Repository": null,
  "Homepage": null,
  "Documentation": null,
  "Download Page": null,
  "Coding Language": null,
  "License": null,
  "Operating System": null,
  "Pricing Model": null
}

pySPM

{
  "Name": "pySPM",
  "Description": null,
  "Authors": null,
  "Repository": null,
  "Homepage": null,
  "Documentation": null,
  "Download Page": null,
  "Coding Language": null,
  "License": null,
  "Operating System": null,
  "Pricing Model": null
}

Please add this software: PyJibe

Hello, please include PyJibe in the software list:

{
  "Name": "PyJibe",
  "Description": "GUI for AFM data analysis with an emphasis on biological specimens",
  "Authors": "Paul Müller",
  "Repository": "https://github.com/AFM-analysis/PyJibe",
  "Homepage": null,
  "Documentation": "https://pyjibe.readthedocs.io",
  "Download Page": "https://github.com/AFM-analysis/PyJibe/releases",
  "Coding Language": "Python",
  "License": "GPL",
  "Operating System": ["Windows", "Linux", "macOS"],
  "Pricing Model": null
}

afm-spm / afm-software-list Goto Github PK

afm-software-list's People

Stargazers

Watchers

Forkers

afm-software-list's Issues

gwyfile

magni

libasd

nanoforce

nanoscope

NSFOpen

pycroscopy

pySPM

Recommend Projects

Recommend Topics

Recommend Org