Scripts and tools for working with T-cell flow assays
- Visualization tool to stack histograms together. Currently being used for comparing expression between cell lines through flow cytometry
- Visualization of shear flow assay. Currently being used with results for a lab meeting, need to generalize tool.
- Parses all result files and concatenates into global results file
- Tools to aid in prep of experiments/assays. Meant to be run on Pythonista on my phone
- Morphology Assay.ipynb
- Reads in shape descriptor files from tracing cell outlines of Jurkats. Backburner but might revive
- Flow Assay.ipynb
- Very old analyses from start of project
- TODO: scavenge for useful methods and trash
- Transmigration.ipynb
- SUUUUPER old analyses, everything is done through FIJI scripts for now
- TODO: scavenge for useful methods and trash