Name: Anthony S. Castanza
Type: User
Company: University of California, San Diego
Bio: Curator, Molecular Signatures Database (MSigDB)
Mesirov Lab, Department of Medicine
University of California, San Diego
Location: San Deigo, CA
Blog: gsea-msigdb.org
Anthony S. Castanza's Projects
scVelo wrapper module for GenePattern
RNA-seq Preprocessing for GSEA
SmartThings open-source DeviceTypeHandlers and SmartApps code
A GenePattern module for running the ssGSEA method
Python port of ssGSEA
STAR RNA-seq aligner wrapper for GenePattern
TCGA.SampleSelection wrapper module for GenePattern.
Jupyter notebooks for the g2nb project
Transcript Quantification Import with Automatic Metadata
tximport.DESeq2 wrapper module for GenePattern.
Wrapper script for preprocessing BAM files for analysis with velocyto in GenePattern
To remember what have been lost !
Jupyter notebooks intended for g2nb workshops
WikiPathways GMT for MSigDB