zwael Goto Github PK

cbioportaldata

Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

clonevol

Inferring and visualizing clonal evolution in multi-sample cancer sequencing

coursera-data-visualisation-in-sas

coursera data visualisation in SAS

datasciencecoursera

Coursera Data science MOOC

datasharing

The Leek group guide to data sharing

docs

TensorFlow documentation

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

geosearch

getting-cleaning-data-course-project

Course Assignment Week 4

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

immunesubtypeclassifier

An R package for classification of immune subtypes, in cancer, using gene expression data.

io

Dataset, streaming, and file system extensions maintained by TensorFlow SIG-IO

kassandra

Bostongene cell deconvolution algorithm from RNAseq

labs

Rmd source files for the HarvardX series PH525x

maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

mfp

Mollecular Functional Portraits

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

r_notebooks

rna-count-kallisto

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

rnaseq_pipeline

rsample_zw

Classes and functions to create and summarize resampling objects

rstatix

Pipe-friendly Framework for Basic Statistical Tests in R

rvest

Simple web scraping for R

scalismo-microsite

microsite for the scalismo project

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

survival

Survival package for R

swimplot_v2

fixing some overlapping and blanck time (more adequate for retrospective data trt time)