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ztsin's Projects

abricate icon abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

abritamr icon abritamr

A pipeline for running AMRfinderPlus and collating results into functional classes

act icon act

analysis of contingency tables and their residuals, with a bootstrap correction for multiple testing

adapterremoval icon adapterremoval

AdapterRemoval v2 - rapid adapter trimming, identification, and read merging

adaptive icon adaptive

:chart_with_upwards_trend: Adaptive: parallel active learning of mathematical functions

agixt icon agixt

AGiXT is a dynamic AI Automation Platform that seamlessly orchestrates instruction management and complex task execution across diverse AI providers. Combining adaptive memory, smart features, and a versatile plugin system, AGiXT delivers efficient and comprehensive AI solutions.

amr icon amr

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

archivy-hn icon archivy-hn

archivy-hn allows users to sync the posts they've upvoted on hacker news to their Archivy knowledge base.

ariba icon ariba

Antimicrobial Resistance Identification By Assembly

audiocraft icon audiocraft

Audiocraft is a library for audio processing and generation with deep learning. It features the state-of-the-art EnCodec audio compressor / tokenizer, along with MusicGen, a simple and controllable music generation LM with textual and melodic conditioning.

automated-wes-analysis-pipeline icon automated-wes-analysis-pipeline

A GitHub repository designed to facilitate the Automated analysis of Whole Exome Sequencing (WES) data using tools such as Fastp, BWA, GATK, and Annovar.

awesome-chatgpt icon awesome-chatgpt

πŸ† An awesome list of best resources, tools, applications, usages of ChatGPT

azure-openai-proxy icon azure-openai-proxy

Azure OpenAI Service Proxy. Convert OpenAI official API request to Azure OpenAI API request. Support GPT-4,Embeddings.

babyagi-ui icon babyagi-ui

BabyAGI UI is designed to make it easier to run and develop with babyagi in a web app, like a ChatGPT.

bamtocov icon bamtocov

πŸ” coverage extraction from BAM/CRAM files, supporting targets πŸ“Š Β 

banditpam icon banditpam

BanditPAM C++ implementation and Python package

barrnap icon barrnap

:microscope: :leo: Bacterial ribosomal RNA predictor

bbmap icon bbmap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

best-of-ml-python icon best-of-ml-python

πŸ† A ranked list of awesome machine learning Python libraries. Updated weekly.

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