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admixtools

Tools test whether admixture occurred and more

ase

Software to detect differential allelic imbalance from RNA-seq data

aseproc

ASEproc can help user to find allele specific expression site from RNA-seq data. We also built a graph procedure to help user draw the scatter plot.

assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bio_594_2018

Repository for BIO 594

bioinformatic-resources

cobscuriorgenome

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

covid_19_jhu_data_web_scrap_and_cleaning

This repository contains data and code used to get and clean data from https://github.com/CSSEGISandData/COVID-19 and https://www.worldometers.info/coronavirus/

ddocent

a bash pipeline for RAD sequencing

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

domestication

example-code

Example code for the book Fluent Python, 1st Edition (O'Reilly, 2015)

example-code-2e

Example code for Fluent Python, 2nd edition (O'Reilly 2022)

excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

falcon-integrate

Mostly deprecated. See https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

files

files

genespace

genome-data-of-hanfu-apple

FASTA files of chromosomes and genes, gff files for gene models.

genome_assembly

Annotation of the Zizania palustris genome

genomesv

scripts uesed in SV analysis

genomics_general

General tools for genomic analyses.

geo

ggplot2-book

ggplot2: elegant graphics for data analysis

gps-pipeline

haplotype-resolved-potato-genome

The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform the analyses in the paper 'Haplotype-resolved genome analyses of a heterozygous diploid potato' (under review).

hellogithub

:octocat: 分享 GitHub 上有趣、入门级的开源项目。Share interesting, entry-level open source projects on GitHub.

hera

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics