zhoujj2013 Goto Github PK

ak47

product for bioinfo

autorun

Automatic link web server to run jobs in HPC server.

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

batchquant

Download bam files and perform quantification for multiple samples.

bedtools

A powerful toolset for genome arithmetic.

cbakit

Common bioinfromatics analysis tool kit.

ctcg

Comprehensive Tool Kit for Comparative Genomics

ctk

CLIP Tool Kit (CTK)

dslnc

Disease specificity analysis of lncRNA through integrative analysis of RNA-Seq datasets

ernadb

database for rna

git-delete

A script that helps you to completely remove files from the history of a git repository

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

jjutil

Some scripts from zhoujj

lncfuntk

Functional characterization of lncRNA by integrative network analysis.

motifpizza

Screen tf motif within provided regions.

nclscan

We have developed a new pipeline, NCLscan, which is rather advantageous in the identification of both intragenic and intergenic "non-co-linear" (NCL) transcripts (fusion, trans-splicing, and circular RNA) from paired-end RNA-seq data.

nozzle

Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

oneliners

Useful bash one-liners for bioinformatics.

pblog

A simple perl program to create, update blog html files. Easy to use, Easy to update.

pearson-cc

A C program that uses MPI/OpenMP to compute Pearson correlation coefficient.

perl-script-to-calculate-pearson-correlation-coefficient

perl1line.txt

collection of handy perl one-liner scripts

recount-contributions

Contribute your human Illumina RNA-seq data to recount2

rickkit

Simple pipelines for ngs data analysis.

roll-server

Scripts to copy rocks roll isos to a generic webserver for local hosting

screennuts

Toolkit for Nuts discovery (Find valuable information for your dairy life! )

tag-seq

Data analysis pipeline for Tag-seq.

topcoat

CSS for clean and fast web apps

tutorials

Tutorials covering various topics in genomic data analysis.

ucsctk

A tool kit for ucsc service.