Comments (2)
Have you installed the psamm-import package? The psamm-import command is provided by a separate package that can be installed with: pip install git+https://github.com/zhanglab/psamm-import.git
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Ok, thanks. I apologize, I did not see this part of the documentation.
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Related Issues (20)
- Allow additional features in medium table definition
- Allow gapfill of specific compound(s)
- New command to perform a single gene deletion experiment HOT 1
- Allow specification of extracellular compartment name HOT 1
- Produce a warning about missing exchange reactions HOT 1
- Split gene associations from reaction database HOT 1
- Incorrect solution to Fastcore LP10 with GLPK
- No warning given when ID is not a string HOT 1
- When loading a medium YAML file the extracellular compartment should be the default compartment HOT 1
- Extend compatibility with older Cplex versions by only using set_offset when available HOT 1
- Allow user to set value of epsilon used in gapfill command HOT 1
- In commands, add a separate command error to signal execution errors HOT 1
- gapfill: Inform user that a lower epsilon value could be used HOT 1
- Make NativeModel constructor take string, dict or file object
- Consistently parse include statements in native module
- Allow reactions with fixed flux in the limits definition HOT 1
- Move YAML writing code from psamm-import to psamm.datasource.native
- YAML reaction incorrectly parsing decimal stoichiometry as float HOT 1
- How to add reactions identified by gap fill to model HOT 1
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