zhangj5 Goto Github PK

academic-website

ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

clt_simulation

coursera-advanced-machine-learning-specialization

Repo for coursera specialization Advanced Machine Learning by Higher School of Economics

covid-chestxray-dataset

We are building an open database of COVID-19 cases with chest X-ray or CT images.

cv

RJH Curriculum Vitae

data_science_in_biology

projects using galaxy, python, linux command line to analyze sequencing data

datasciencecoursera

datasharing

The Leek group guide to data sharing

dd_protocol

Official repository for the Deep Docking protocol

deep-learning-coursera

Deep Learning Specialization by Andrew Ng on Coursera.

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

deephase

DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular grammar of protein condensates from sequence determinants and embeddings" (Saar et al., 2021, PNAS)

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

docgpt

ChatGPT directly within Google Docs as an Editor Add-on 📑

enhancer_cnn

example-code

Example code for the book Fluent Python

excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

genbioconductor

Materials for Genomics Data Science: Introduction to Bioconductor

genomic-data-science

Genomic data science specialization

genstats

Statistics course for JHU Genomic Data Science Sequence

jz_cv

JooYoung Seo's Academic CV Written in R Markdown

mds-expression

R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes

model_files

place to store files for common uses

myblog

relapsed_aml

Scripts for data analysis in relapsed AML study

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.