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caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

caiman-feedstock

A conda-smithy repository for caiman.

casmls.github.io

Columbia Advanced Machine Learning Seminar

cudadecon-feedstock

A conda-smithy repository for cudadecon.

dask-notes

deeplabcut

Markerless pose estimation of user-defined features with deep learning for all animals including humans

dsprites-dataset

Dataset to assess the disentanglement properties of unsupervised learning methods

holoviews

Stop plotting your data - annotate your data and let it visualize itself.

holoviews-notes

intake

Intake is a lightweight package for finding, investigating, loading and disseminating data.

jupyterlab-lsp

Language Server Protocol integration for JupyterLab (code navigation + hover suggestions + linters + autocompletion + rename)

nocode

The best way to write secure and reliable applications. Write nothing; deploy nowhere.

pybbbc

Python interface and preprocessing pipeline for the BBBC021 dataset of cellular images

pycudadecon

Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy

pyjanitor

Python implementation of R package Janitor

pytorch-hcs

Predict drug mechanism of action from high content screening images using PyTorch

pytyphoon

Python implementation of Typhoon algorithm: dense estimation of 2D-3D optical flow on wavelet bases.

ray

A system for parallel and distributed Python that unifies the ML ecosystem.

ray-notes

Notes based on my exploration of the Ray distributed multiprocessing library

snap

Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library.

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks