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allensdk

amortized_community_detection

Implementation of the Attentive Clustering Process (ACP) algorithm.

anndata

Annotated data.

cellprofiler

An open-source application for biological image analysis

clearmap

ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.

dash_cell_browser

deep-neuro-morpho

Morphological classification of neuronal cell types using deep convolution neural networks

dsb_2018_parameter_selection_for_matterport_mask_rcnn

ephys_analysis

Processing and analysis of patch clamp electrophysiology data

face3d

Python tools for 3D face: 3DMM, Mesh processing(transform, camera, light, render), 3D face representations.

gnn4cd

Supervised community detection with line graph neural networks

gqn-world-model

Action-conditional scene rendering for RL agents in 3D games

gym

A toolkit for developing and comparing reinforcement learning algorithms.

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

kaggle_dsb2018

Kaggle DSB 2018

keras-rcnn

Keras package for region-based convolutional neural networks

mask_rcnn

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

mctsegmentation

Deep-Learning for Tidemark Segmentation in Human Osteochondral Tissues Imaged with Micro-computed Tomography

ml-agents

Unity Machine Learning Agents Toolkit

ncp-sort

Spike sorting using the Neural Clustering Process (NCP) algorithm

neuro-morpho-rnn

neurod-io

Fun iOS game of brain activity

neuron_morpho_classification_ml

Morphological Neuron Classification using Machine Learning

optml-svrg-pytorch

Implementation of SVRG for training neural networks

organoid-browser-frontend

Frontend for organoid electrophysiology and single-cell RNAseq data browser

pythonista-tools

Gathering code and links to projects specially developed for Pythonista for iOS.

pytorch-sketch-rnn

a pytorch implementation of https://arxiv.org/abs/1704.03477

rsconnect

Deployment interface for Shiny applications

seaborn

Statistical data visualization using matplotlib

seurat

R toolkit for single cell genomics