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astrocytemorphology

camera2videoapp

camera2videoappfunctional

dicomtovtk

Script to convert Dicom files to VTK for 3D visualization

digitalholographicmicroscopy

fcs_removeoverallmeanintensity

Removes the mean intensity of from each frame in a

fijicuda

Docker image including CUDA and Fiji

guineapig

Guinea Pig OCT image analysis suite

ix83-modules

Modular inverted microscope for combinatorial imaging technqiues

neuralnetwork

convolutionnetworktensorflow

oct_capillary_biofilm

Collection of scripts to analyze Biofilms grown in the capillary imaged by FF-OCT

octavecondadocker

Docker image for DeepSTORM neural network

off-axis-dhm-system

optical_flow

Generates optical flow of time series of images with OpenPIV

order-parameter

p-dhm

Protable Telecentric Holographic Microscopy

plate_scanner

Files for Plate Reader

spheroid_analysis

Code to import, downsample, crop SPIM images, filter ROIs, and generate bounding box for individual spheroid.

spim

SPIM control software

spim1

Lightsheet microscope

spim2

spim3

sr_1d_clustering

Identifies quasi-1D clusters in super-resolved coordinates generated by ThunderSTORM

sr_background_corrections

Collection of Scripts to correct for background heterogeneities in super-resolution raw datasets

sr_density

Calculates local density (# of localization per unit area) surrounding each localizations in super-resolution microscopy data.

sr_fftplot

Builds Fourier Transform of a superresolved "1-d" structure (usually filaments)

sr_filament_simulation

Application to simulate super-resolution imaging of filamentous or arbitrary structures

sr_nearestneighbours_onecolour

Calculates nearest neighbours of a given dataset

sr_nearestneighbours_twocolours

Calculates nearest neighbours between two different datasets. Given DS1 and DS2, explores the points on DS1 and finds what points of DS2 are the closest ones.

tifftovtk

Converts a Tiff Stack into a VTK file for 3D rendering