yini-li Goto Github PK

beautiful-jekyll

:sparkles: Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

cardips-ipsc-eqtl

CARDIPS iPSC eQTL study.

cas13

crisporpaper

Code for the CRISPOR article, all data and code to create figures and analysis

cv

detect-seq

An unbiased method for genome-wide CBE off-targets assessment

dynamo-release

Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

epimap_analysis

Epimap processing and analysis code repository

exomepeak

Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approach

guideseq

Analysis pipeline for the GUIDE-seq assay. For news, see:

jvarkit

Java utilities for Bioinformatics

matchedfilter

Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles

medip-seq

A set of scripts and functions for analyzing MeDIP-seq datasets

merip_reanalysis_scripts

Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq

meriptools

scnt-seq

Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)

scriboseq_manuscript

smart-seq3

Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).

txburst

Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" by Anton J. M. Larsson, Per Johnsson, Michael Hagemann-Jensen, Leonard Hartmanis, Omid R. Faridani, Björn Reinius, Åsa Segerstolpe, Chloe M. Rivera, Bing Ren and Rickard Sandberg

zumis

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs