Ye Zheng's Projects
This repository contains starting tutorials for working in bioinformatics.
ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration.
Compare Bowtie and BWA
SImulation for Correlation Motifs model
Tutorial Website
An R package for differential analyses of Hi-C data. See https://bioconductor.org/packages/release/bioc/html/diffHic.html for the release version, or https://bioconductor.org/packages/devel/bioc/html/diffHic.html for the official development version.
FreeHi-C pipeline for high fidelity Hi-C data simulation.
FreeHiCLite r package to perform FreeHiC
ggplot tricks
Notes about using HTCondor
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Logs, Notes, Experiences
R package: Permseq
permseq modified in July 2017
Demo input and output datasets for "permseq" package and some examples.
Homework for STAT826
A collection of Galaxy-related training material