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ampc_obstacle_avoidance

MECHENG 561 course project

archived_external_resources

Archived external programs. None of the stuff here is developed by me so please refer to the original sources.

arxiv-sanity-preserver

Web interface for browsing, search and filtering recent arxiv submissions

bb-seq-analysis

Barebone sequencing analysis pipelines

bioinf527_project_share

Quick file sharing for BIOINF527, Fall 2021

coursera_gcd_project

Coursera Getting and Cleaning Data Course Project

denmx2

Drosophila Environment Monitor X2

edgecounter

Counting edges of BAM alignment against a GRanges object

ender3s1

This is optimized firmware for Ender3 V2/S1 3D printers.

example-imagej2-command

Testing ImageJ2 Command Plugin

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

irfinder

markdown_images

This repo stores markdown file reference images

motifanalysisexports

Browsable motif analysis results (Bioinformatics)

pipelineabe

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

pub_atac_2024

Code for publication "Clock-dependent chromatin accessibility rhythms regulate circadian transcription"

punctatracker

A general ImageJ2 Jython plugin for "puncta analysis"

regexcite

R Packages 2ed Getting Started Package Example

reprtree

Representative trees from ensembles

rna_fish_analysis

RNA-FISH analysis snakemake workflow

rnaseq

Script and final analyzed data for RNA sequencing experiment

sequencing_tools

Contains sequencing tools from all external sources with proper reference.

smk_rna_fish

RNA FISH Analysis workflow

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

system-config

Decky plugin for quick setting of Steam Deck common config options.

ucsc_trackhub_test

Testing track hub settings for UCSC browser

ucsc_trackhubs

UCSC trackhubs

y3628

R package for various standardized analysis tasks