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Name: Yan Wang
Type: User
Company: University of Toronto
Bio: @WangLab-UToronto PI working on fungus-insect symbiosis, fungal genome evolution, and comparative genomics.
Twitter: funganomics
Location: Toronto, Canada
Name: Yan Wang
Type: User
Company: University of Toronto
Bio: @WangLab-UToronto PI working on fungus-insect symbiosis, fungal genome evolution, and comparative genomics.
Twitter: funganomics
Location: Toronto, Canada
Alignment files used in the Wang_et_al_2018_AGF_manuscript
This repository includes the alignment file used to reconstruct the phylogenetic tree (in both .nex and .phy formats) as well as the partition file and a prefix file containing the taxa name information.
reads a .delta.filter.coords output and calculate the percentage of identity among the matches
reads a codon alignment (fasta from the 1st pos)--trim the remaining ends if not end with 3.
filter out short multiple sequence alignment file for phylogenomic analyses
Identify reciprocal best BLASTp hits
Filter out the potential horizontal gene transferred element based on a similarity comparison method
Isolate ortholog-representatives from each individual according to an MCL-based method
This R script is used to plot ridge map of each domain for a given table (column names are domains)
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