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droughtr

An R package for reducing bias in drought forecasting applications

echarts4r

🐳 ECharts 4 for R

edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

enhanced_paper_rss

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

falco

A C++ implementation of FastQC for quality control of sequencing data

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

fastq-multx

Demultiplexes a fastq.

friendly-snippets

Set of preconfigured snippets for different languages.

future

:rocket: R package: future: Unified Parallel and Distributed Processing in R for Everyone

g2

📊 A highly interactive data-driven visualization grammar for statistical charts.

g2plot

:dango: An interactive and responsive charting library

gatk

Official code repository for GATK versions 4 and up

gencore

Generate consensus reads to reduce sequencing noises and remove duplications

gtfparse

Parsing tools for GTF (gene transfer format) files

guitar

hisat2

Graph-based alignment (Hierarchical Graph FM index)

hisat2_debug

hugo-theme-diary

Moments piled up. A Hugo theme ported from SumiMakito/hexo-theme-Journal.

icshape-pipe

Pipeline to calculate icSHAPE score in genome with sliding window strategy

intermine

A powerful open source data warehouse system

isoseq3

IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

jacusa

JAVA framework for accurate SNV assessment

jacusa2

New version of JACUSA -> 2.0

js_jump_to_page

a short demo

jvarkit

Java utilities for Bioinformatics

kas-pipe

KAS-pipe is an analysis pipeline for KAS-seq data. KAS-seq allows rapid (within 5 min), sensitive and genome-wide capture and mapping of ssDNA produced by transcriptionally active RNA polymerases, DNA replication or other processes in situ.

lc96parser

convert roche lc96p file into RDML file and show CT values in Excel format

lineardesign

The LinearDesign mRNA design software.

m5c-ubsseq

Ultrafast bisulfite