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Make particle picking working about aitom HOT 5 OPEN

xulabs avatar xulabs commented on August 21, 2024
Make particle picking working

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Comments (5)

xulabs avatar xulabs commented on August 21, 2024

Can start with this tomogram:
http://ftp.ebi.ac.uk/pub/databases/empiar/archive/10045/data/ribosomes/Tomograms/05/IS002_291013_005.mrc

first reduce its size through bining, see here:

https://github.com/xulabs/aitom/wiki/Tomogram-manipulation

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xulabs avatar xulabs commented on August 21, 2024

TODO:
replace with a larger tomogram
upload imod display code

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xulabs avatar xulabs commented on August 21, 2024

display code added to
aitom/pick/plot/particle_location_display_imod.py

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xulabs avatar xulabs commented on August 21, 2024

@wobushiyitouzhu

Can start with this tomogram:
http://ftp.ebi.ac.uk/pub/databases/empiar/archive/10045/data/ribosomes/Tomograms/05/IS002_291013_005.mrc

first reduce its size through bining, see here:

https://github.com/xulabs/aitom/wiki/Tomogram-manipulation

from aitom.

xulabs avatar xulabs commented on August 21, 2024

@wobushiyitouzhu please also explain the input parameters and output data format by adding comments to corresponding functions.

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