Xiaotong Yao's Projects
The next version of bwa-mem
Clinical whole genome sequencing report
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
The final project for Bioinformatics & Genomes (Bonneau. R). Using MEME to detect conserved motifs in the intergenic regions of co-regulated genes given by clustered time-course micro array data.
R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.
To determine what set of gene feature contribute to a RNA binding protein coding gene to be coding a SUMOylated protein.
making interesting pictures of SV in cancer genomes
R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
Scalable GenomicRanges based class for storing, manipulating, and querying genomic matrices and pairwise features.
Xiaotong Yao's homepage
Analysis for the iSumo paper.
R scripts and datasets for reproducing the figures used in JaBbA paper
running certain modes of DELLY on just a subset of a BAM file
Materials for presentations
Performant Pythonic GenomicRanges
Computer_Lab_Material_for_QG16
The source code of learning-rust.github.io
General purpose mskilab R tools
Tutorials covering various topics in genomic data analysis.
PhD thesis
Xiaotong Yao's site
hugo styled blog